PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EPS65759.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
Family bHLH
Protein Properties Length: 98aa    MW: 11422.7 Da    PI: 11.2575
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EPS65759.1genomeLSMUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.24e-106995430
                HHHHHHHHHHHHHHHHHHHHHCTSCCC CS
         HLH  4 ahnerErrRRdriNsafeeLrellPka 30
                 hn  ErrRRdriN+++ +L+el+P++
  EPS65759.1 69 VHNLSERRRRDRINEKMRTLQELIPHS 95
                5************************95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474596.67E-96396IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088811.3766598IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.8E-96895IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.89E-56897No hitNo description
PfamPF000101.6E-76995IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 98 aa     Download sequence    Send to blast
RTSSAMEHSS IMTVELSRHS TTNNDGGGNR NKKRRKSRNV EESESPSDDV FVESDIRQKS  60
ARKNRVAEVH NLSERRRRDR INEKMRTLQE LIPHSHKV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13135KKRRK
27378ERRRRD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011100371.16e-20PREDICTED: transcription factor PIF4
RefseqXP_011100372.16e-20PREDICTED: transcription factor PIF4
SwissprotO805363e-14PIF3_ARATH; Transcription factor PIF3
TrEMBLS8CFQ22e-64S8CFQ2_9LAMI; Uncharacterized protein (Fragment)
STRINGLOC_Os03g43810.11e-17(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA104652226
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.26e-15phytochrome interacting factor 3
Publications ? help Back to Top
  1. Leushkin EV, et al.
    The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences.
    BMC Genomics, 2013. 14: p. 476
    [PMID:23855885]